Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015858696.1_cds_XP_016514040.1_26532
CDS Infomation

[gene=LOC107830880] [db_xref=GeneID:107830880] [protein=pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like] [protein_id=XP_016514040.1] [location=complement(join(81649..82948,83833..84671))] [gbkey=CDS]
Sequence

ATGGCGCTGAAACACTCCTTTATCCCGTCTTCTGCTTCCTGTACATTACAGGTCAATCAC
TACTCCTATGTCCCTCACCCTGTTACAATTAGAAAAAATCCCATATGCCTTAGACCATTC
TCTCAATCATCCTTCCCTTCTTTCTCCAGCTCTTGCCTTCCTCAGACTACATCCTCCCCC
CTTTTCCTTTCTTTTCTTGAAGACGACGAAGAAGAATCTGAAGAAGAAGAAGAAGAACTT
ATTCTTTCAGAAACCGAGCAGCTAAAACAACCAGACAATGACCCAATTCGCCGGTTCTTC
CAGACCCGGACTGCAGACTTAGAATCCGACCCAGACCCAGGTCGTGAAGGCAAGTTATCA
TTTTCAAAGAACCGTAAAACATCTTGGCACCTCGCTTCTATCAGTAGTTCAACTGAAAAT
GACGAGGACGAGGTCGAGGACATACTAAACTTACCACTCGACACACTCTCAAGTCCTAAA
AATGAGGGTGTTGTAAGTGAAATATTGGCAAAGGCGAGGAGTTTACCGGAAAATGTGACG
TTAGGGGAGGTATTAGGGGAATTTGAAAGGAGGGTTGGGGCAAAAGAGTGTGAAGAGGTG
CTGGGTTTATTAGGAAATGAAGGTTTGGCTATTAATTGCTTGTATTTTTTCGAGTGGATG
AGGCTTAATGAGCCTTCATTGGTTACACCTCGCGCTTATACAATTCTGTTCCCTATACTT
GGGAGGGCTGGTATGAGCAAGGAGTTGCTAGTTTTGTTTAAAAACTTGCCTGGAAAAAAA
GGGTTCAGGGATGTTCATGTTTACAACGCGGCCATTTCCGGGTTTTTATGCTGTAGAAGG
TATGATGATGCTTGGGGAGTTTTTGAGTCCATGGAAACAAATTCTGTCCAACCAGACCAT
GTGACGAGTTCCATTATGATTACAATTATGAGGAAACGAGGCAATAGCGCCAAAGAAGCT
TGGAATTTATTCGAAAAGATGAACGGAAAAGGTGTGAAGTGGAGCTTGGAAGTAGCAGGC
GCTCTAATTAAATCCTTTTGTGATGAAGGCCTGAAGAAGGAAGCTTTAATTATCCAGTCA
GAAATGGAGAAAAAGGGAATATCTTCTAACGTCATTGTCTATAATACTCTGATGCATGCT
TACTGTAAAGCCAACCAAATTGAAGAAGCTGAAGGTCTCTTTGATGAGATGAAGAGGAAA
AAAATTGCACCTACCTCGGCTACTTACAATATTTTGATGGATGCATACAGTAGGAGACTG
CAGCCTGATGTTGTTGAGAAACTGCTACTGGAAATGGAAAATGCTGGTTTGGAGCCAAAT
GTGAAATCATATACATGCCTGATCAGTGCCTATGGTAAACTGAAGAAAATGAGTGACATG
GCTGCAAATGCATTCTTGAGGATGAAAAAGGTTGGTATAAAACCGAATTCTTACTCTTAT
ACAGCTCTTATCCATGCCTATTCAATCAGTGGGTGGCATGATAAAGCTTATACAGCTTTT
GAGAACATGCTAAGGGAGGGAATAAAACCCTCGATAGAAACTTATACTGCTCTGCTTGAT
GCATTTAGACGTGCTGGTGATACCCAAACACTCAAGAAAATTTGGAAAATGATGATCAGA
GATAAAATTGAAGGGACAAGGGTGACATTTAACATTCTACTCGATGGATTTGCTAAACAA
GGTTGCTATGTTGAAGCAAGAGATGTGATTTGTGAGTTTGGGAAGCTTGGGTTACAGCCA
ACAGTAATGACTTACAACATGCTGATCAATGCATATGCAAGAGGAGGAGAAGAATCAAGG
TTGCCACAGCTTGTGAAGGAGATGGCAGCACTTAATCTAAAACCTGATTCTATTACTTAT
TGCACAATGATATATGCCTATATCCGTGTGCGGGATTTCAAGAGGGCATTTTATTATCAC
AAGCAGATGGTGAAAAGTCGGCAAGTGCCTGATACTGAATCATATGAGAAGCTCAGGGCA
ATTCTGGATGTAAAAGCTGCCATAAAGAACAGGAAGGATAAGAGTGCTTTAATGGGAATA
GTTAGAAGCAGTATGGGCTTGTTGAAAGAGAAGAAAAAGGGAAAGAAGGATGAGTTCTGG
AAAAATAGAAAAAGAGGATCAAGATTTCAAGGACAGTAA

Peptide Sequence

PEP ID

XP_016514040.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like [Nicotiana tabacum]
Sequence

MALKHSFIPSSASCTLQVNHYSYVPHPVTIRKNPICLRPFSQSSFPSFSSSCLPQTTSSP
LFLSFLEDDEEESEEEEEELILSETEQLKQPDNDPIRRFFQTRTADLESDPDPGREGKLS
FSKNRKTSWHLASISSSTENDEDEVEDILNLPLDTLSSPKNEGVVSEILAKARSLPENVT
LGEVLGEFERRVGAKECEEVLGLLGNEGLAINCLYFFEWMRLNEPSLVTPRAYTILFPIL
GRAGMSKELLVLFKNLPGKKGFRDVHVYNAAISGFLCCRRYDDAWGVFESMETNSVQPDH
VTSSIMITIMRKRGNSAKEAWNLFEKMNGKGVKWSLEVAGALIKSFCDEGLKKEALIIQS
EMEKKGISSNVIVYNTLMHAYCKANQIEEAEGLFDEMKRKKIAPTSATYNILMDAYSRRL
QPDVVEKLLLEMENAGLEPNVKSYTCLISAYGKLKKMSDMAANAFLRMKKVGIKPNSYSY
TALIHAYSISGWHDKAYTAFENMLREGIKPSIETYTALLDAFRRAGDTQTLKKIWKMMIR
DKIEGTRVTFNILLDGFAKQGCYVEARDVICEFGKLGLQPTVMTYNMLINAYARGGEESR
LPQLVKEMAALNLKPDSITYCTMIYAYIRVRDFKRAFYYHKQMVKSRQVPDTESYEKLRA
ILDVKAAIKNRKDKSALMGIVRSSMGLLKEKKKGKKDEFWKNRKRGSRFQGQ

Transcript Sequence

Gene sequence data has not been registered.